species:   Pimic
pid:       PID1827
parent:    Pmic_miR-4
paralog:   
locus:     scaffold_5:542437-542560
matures:   ['UAUGGGCUGGCCUAGGCAUGG', 'UGUCAGGGGCCAGCUUUCCUC']
srr:       SRX5082465
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082465.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082465.cram scaffold_5:542437-542560

0 out of bounds
16 alignments
14 proper strand
8 stranded perfect matches

                                                                        ***********************      ***********************
GUCAGCAUAUGCCCGACUCCUCACAUGACCACUACCAGUGUAGCUUGGCAACUCCCUGGGGUCAGGUGACUACCUGUCAGGGGCCAGCUUUCCUCUUGGGUGCUAUGGGCUGGCCUAGGCAUGG
(((.((....))..)))...((((.(((((....((((.((.((...)).))...))))))))).))))...((((((..(((((((((((((....)))......)))))))))).)))).))
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=3 c
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 c*
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=3 ma
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 ma*

----------------------------------------------------------------------UACCUGUCAGGGGCCAGCUUUCCU------------------------------ l=24 a=1 
---------------------------------------------------------------------------------------------UCUUGGGUGCUAUGGGCUG------------ l=19 a=1 
---------------------------------------------------------------------------------------------UCUUGGGUGCUAUGGGCUGGCC--------- l=22 a=1 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUa- l=20 a=4 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=3 (c,ma)
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGa l=21 a=2 
--------------------------------------------------------------------------------------------------------AUGGGCUGGCCUAGGCAUG- l=19 a=1 
---------------------------------------------------------------------------------------------------------UGGGCUGGCCUAGGCAUGG l=19 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
